PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001543.1_g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 237aa    MW: 25819.9 Da    PI: 9.8117
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001543.1_g00010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.000396183123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             + C++C + F ++  L  H++ H
  Itr_sc001543.1_g00010.1 61 FACNYCRRKFYSSQALGGHQNAH 83
                             78******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.08E-65789No hitNo description
PROSITE profilePS5015711.3446188IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MESRQEEREK DQEVEGEERR GGVLLDLSLS RRESSDKTPP APADEFRGPK ASSETTEPRV  60
FACNYCRRKF YSSQALGGHQ NAHKRERTMA KRGQKMLAAA AAFGYDAPMH RYPSMASLPL  120
HGSFNRSLGI QAHSMIHKPA GGYFGAPAAG AGPQPIYGFN GWPRRPLNQQ PAVGRLPTEC  180
LGSSSNSGAA RFDSEAKFPP VVDGGIRWDS VGRGGGASHI KINNQDELNK LDLSLKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016464755.18e-70PREDICTED: zinc finger protein 3-like
TrEMBLB9SMU58e-69B9SMU5_RICCO; Zinc finger protein, putative
STRINGPOPTR_0001s14780.11e-63(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58272233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.11e-40zinc finger protein 3